PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009134642.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 318aa    MW: 36765.8 Da    PI: 10.1307
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009134642.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0016991223
                    EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2  2 kCpdCgksFsrksnLkrHirt.H 23
                    +C+ Cgk F+    L++H  t H
  XP_009134642.1 69 RCGECGKGFRYEKCLRNHSETmH 91
                    7*****************88877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.4276896IPR007087Zinc finger, C2H2
SMARTSM003550.566891IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807091IPR007087Zinc finger, C2H2
SuperFamilySSF576672.51E-5274305No hitNo description
PfamPF139121.1E-6276298IPR007087Zinc finger, C2H2
PROSITE profilePS501579.286276303IPR007087Zinc finger, C2H2
SMARTSM003550.95276298IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280278298IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MEDHQEFEKP IFELHNRKVR SSRKRKNRLG ESMNHHYEEI FCYYGLRESP RKKRTTQKPL  60
RIKKKRLVRC GECGKGFRYE KCLRNHSETM HSLEEKKKKS ECMRRDLLCF FRSGGVQRRK  120
RSKRVSRYKK SLPPLSVSSS SSSSAFGSGG ELLEVAESLI MLSKSGDALF SKLEMNEREC  180
EDGLLGNEQK LVGSLSNELR LVGIRTDSNG TSKELLGFLG DKKVMREDEV GAESFGEEVR  240
LERVSLDDTE QKLGGQEAVF EVSNSASKGF QMNNEHRCRL CERVFSTYQA LGGHQTFHRM  300
KNNYEKSKHE MQRRASRS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15165KKRTTQKPLRIKKKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009134642.10.0PREDICTED: uncharacterized protein LOC103858938
TrEMBLM4C9Z70.0M4C9Z7_BRARP; Uncharacterized protein
STRINGBra001026.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75191630
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15480.14e-16C2H2 family protein